Week 2: Processing, splicing, and maintaining

Howdy all,

Week two with the HOT team has managed to equip me with a greater understanding of how CTD data is processed, new equipment is made in preparation for research cruises, and instrumentation is maintained between cruises. 

On Monday we learned how the Hawaii Ocean Time team processes their CTD data by following a standard processing procedure after each cruise. This procedure involves removing duplicate data points, binning data, and communicating with databases to store the roughly processed data. After this is completed, a series of quality control checks is performed by the HOT team research associates and data reports are generated. The majority of this processing is fully automated using a mix of MATLAB, Python, and Bash scripting. After learning how HOT processes their data we were introduced to the Seasoft method of CTD data processing and learned the advantages and challenges of converting to this processing system. 

On Tuesday we learned how to properly splice different CTD-sensor connecting cables together for the next HOT cruise. With this introduction, we checked wire continuity, soldered connections, and properly waterproofed the connections to handle extreme pressures and temperatures. On Wednesday we disassembled, inspected, and cleaned a Seabird carousel. We learned how the device worked and the common maintenance checks that should be performed after each cruise to ensure its continued operation. On Thursday, we learned how to horizontally plumb a backup CTD to ensure that the temperature, conductivity, and oxygen sensors work properly. We also disassembled, inspected, and cleaned a LADCP system and learned how its data is recorded. 

Come Friday, we took a trip to the University of Hawaii Manoa Marine Center to install the new carousel on the HOT rosette, disassemble the Niskin bottles, and test new CTD orientations and mounting ideas. 

Overall, this week was a great introduction to new equipment, data processing best practices, and hands-on technical experience!

Best,

Hunter

Week 2: Technically Speaking

We are back on land this week to help Dan and Carolina in the lab. And with a view like this on my commute across campus, I cannot complain!

This past week we focused on physical oceanography with our mentor Dan. He worked as a marine technician on board the R/V Kilo Moana for 10 years before joining the HOT team so he is the go-to guy for marine tech questions! The first job for the physical oceanography team is analyzing the salinity samples we collected on the cruise using the Salinometer. Fernando explained how the instrument works and that it can be sensitive to changing temperatures in the room so we had not one, not two, but three different thermometers to ensure our samples stayed cool. It was high maintenance!

 

Fernando was also great at explaining how the team processes most of their CTD data. He broke down their methods and how they have stayed consistent in creating their time series over the last 35 years of the project—everything must be consistent! He gave us great resources to continue learning about data processing on our own time and I am looking forward to practicing my coding skills in my free time.

 

Back in the lab with Dan, we helped splice cables and switch the CTD configuration from vertical to horizontal. It was surprisingly difficult to move the oxygen sensors and tubing to a different position while still ensuring that water could flow without issues. There is a ton of detailed thinking that goes into how these systems operate and whether the data could be significantly affected by repositioning the instruments. This next cruise will be the second test run to see if the data is heavily impacted but we have faith in the new system because most other UNOLS ships use a horizontal configuration.

 

Thursday and Friday consisted of taking things apart to see how it works and putting it back together again. First up was the LADCP which is similar to the ADCP we would see on most ships. It was much heavier than I thought it would be and the circuitry was cool to see. Then, we fixed up a new carousel to replace the old one.

 

On Friday, we took a field trip to the marine center to work on the CTD rosette and take apart a Niskin bottle. Hunter and I took turns un-hooking the spring inside each Niskin (an often-neglected part of maintenance between cruises to prolong the lifespan of the springs). We were able to replace the carousel inside the center of the rosette with our newly fixed version. Accessing the screws to this part of the rosette is deceivingly difficult. I could not reach them by climbing on the top (this was clearly designed by a man with longer arms). Instead, I had to crawl under and inside the rosette like a rock-climber to unscrew the old parts. Dan said it is even more tedious on a moving ship but that maintaining the rosette is a huge part of a marine tech’s job.

This week with Dan was an incredible opportunity to learn more technical skills and do some hands-on maintenance that marine techs would do post-cruise. I cannot wait for next week with Carolina!  

Jenn

Week 2: Aleutian Island Adventures

 

During Week 2, the old scientist group officially had left to make way for the new arrivals in Dutch Harbor for the AMOS cruise. I settled into a marine tech routine, delving into the ship’s depths to clean filters, prepare the CTD for the upcoming cruise, check the niskin bottles, polish fridges, and set up the lab space for the science party. I even assisted in fixing a fume hood, an entirely new experience for me; I was feeling like a handyman onboard.

After a day of work, one of my mentors, Bern, took me into town to show me around and buy a mustang suit, although it turned out to be the wrong size. Instead, we ended up driving around the town to explore and visit attractions, such as the old Russian church and the beautiful World War II memorials and Coast Guard graveyards. It was an enjoyable day, but while in the graveyard, Bern accidentally stepped on a marble grave shaped like a book with a beautiful poem on it, which belonged to a woman named Jacqueline. Strangely, moments later, as we descended the mountain towards the car, I heard a ‘yelp!’ and turned around to see my 6’4 mentor with his entire leg stuck in a hole in the ground. I couldn’t help but wonder if Jacqueline might have been upset with him, though I’m not superstitious, just a little stitious. I made him apologize, and everything turned out fine.

Back on the ship, we learned that one of our engines was no longer working, and the science party was arriving, along with my other mentor. We were possibly going to be stuck in Dutch Harbor for at least a week or more while we ordered spare parts for the engine, and a major storm with potential 80mph winds was approaching. Despite these challenges, the engineers worked tirelessly to diagnose the engine issue and prepared to replace it.

While all this was happening, the crew and the rest of us who were temporarily stuck had some free time once our shifts ended. I explored the town with the crew, visited a saloon, went hiking, took walks around the town, enjoyed milkshakes, and indulged in my favorite pastime—visiting Alaska Dutch Harbor Supplies to check out the cool gear for sale. I ended up buying a vest, which I’m quite fond of. For those who know me, please don’t judge; my other vest had ripped, and this carhartt vest is incredibly warm.

I experienced my first Friday the 13th on a boat, and superstition prevailed as no operations were conducted that day. Good luck favored me though as I finally got my mustang suit, which would keep me warm and cozy in the icy conditions.

The setback with the engine allowed the science party time to refine their instruments, make necessary adjustments, and conduct numerous tests in the bay over the last two days. Surprisingly, this delay turned out to be a blessing in disguise, as all the instruments were now primed and ready for deployment in the ice. Confidence was at an all-time high, and witnessing the AUV deployments and recoveries was a fascinating experience. I’ve included another set of pictures from my onshore adventures exploring the islands and practice deployments and recoveries. If the engine gets fixed next week, we should finally be on our way to the ice. Fingers crossed. Thank you for reading, and see you next week!

 

Mari

Week 1: Working at sea is HOT (Hawaii Ocean Time-series)

After leaving the rain behind in Seattle, I was thrilled to arrive in a sunny and warm Honolulu last week! My first stop was the R/V Kilo Moana to drop off my bags and get situated in my room on board.

The chief mate, Jamie, gave me a fabulous tour of the ship and introduced me to almost the entire crew. After my intern partner, Hunter, arrived and settled in, we took an Uber to Waikiki and spent the afternoon lounging on the beach before a busy work day on Friday.

The next morning, we woke up bright and early for the 6:30 am breakfast call and fueled up for Loading Day. Vans full of sensors and lab equipment pulled on to the dock ready for our help to set up the science labs on board. We carried box after box and carefully stowed them in their designated spaces in each room. The whole loading process was incredibly organized and efficient. This was the 345th HOT cruise so they’ve got a routine down by now! We finished up after a few hours, ate lunch and headed back to the beach to enjoy our last few hours on land.

…And we’re off! We left port on Saturday morning around 9:00 am headed for our first station of the cruise at Kahe just off the coast of Oahu. I helped Hunter and Dan prepare the first CTD cast and then headed to bed after my shift ended at 3 pm. Hunter and I split up the day in shifts-I have the morning shift from 3am to 3pm, he covers the evening, and we will switch for the next cruise in November.

2:15 am. Rise and Shine! The first task of the day was recovering the primary production CTD cast and collecting water for the primary production array. The hard part? We have to collect it in the dark. Any white light could cause a spike in biological activity before we deploy the array. Luckily, we use these groovy red lights while we filled up the big jugs. The rest of the day included a trace metal cast, hyperpro and net tow before our big transit out to Station ALOHA.

The following day started with a tense moment when the hydraulics on the Hawboldt CTD winch failed, spraying oil on deck. Big efforts by the science team and crew were made to move the CTD casts to the A-frame which involved re-terminating the CTD wire and moving the CTD rosette into the staging bay–both deceivingly difficult to do. Many hours later, the other winch failed too. Ultimately, the team fixed the original winch and moved everything back to its original position.

The rest of the cruise was fantastic! I was so excited to help recover the sediment traps and the gas array. Dan gave me a shot at throwing the grappling hook around the floats in the water (which is much harder than it looks) and we eventually got it back on deck.

The two marine technicians on board were amazing resources to learn from too! Trever walked me through the steps for CTD cast deployment and recovery, teaching me all of the hand signals to communicate with the winch. Then, to my surprise, he handed ME the walkie-talkie and said “you try!” That was the highlight of the cruise. I loved stepping into the shoes of a marine technician and communicating with the winch and the bridge to conduct a safe and successful deployment (and then recovery too).

On our way back into port, we watched the most amazing sunrise over Oahu, silhouetting Diamond Head in the distance. The clouds never fail to amaze me in Hawaii.

When we arrived in port on Wednesday morning, the whole team quickly packed up boxes and sensors back into vans to drive back to campus. Hunter and I did our best to help Dan unload all of the equipment and stow it back in the lab on land. We settled into our respective apartments here on the UH campus and went back the next day to continue helping Dan with post-cruise tasks like making new cables and organizing all of the cruise notes.

I cannot wait to keep learning from Dan and Carolina for the next few weeks on land. There are plenty of samples to keep us busy before we prepare for HOT cruise 346 in November!

– Jenn 🙂

Week 1: R/V Kilo Moana, HOT 345

Howdy all,

This first week in Hawaii has already been an invaluable experience in helping me understand the role and responsibilities of a marine tech in contributing to a vital oceanographic time series. 

For the first two days of my internship, I was able to spend some time aboard the R/V Kilo Moana where I got to meet the crew and better understand the ship itself. While loading and preparing for HOT 345 with the science team, I learned how a CTD termination is performed, a basic job requirement for any marine technician. After helping the science team and crew pack for the cruise we were off to Station Kahe the next day to weight test the Hawboldt LARS wench system, perform a Hyperpro cast, CTD cast, and a trace metal cast. Even on the first day of the cruise, I was already being exposed to new scientific equipment and sampling techniques. After performing these preliminary tests and sampling we were off to Station Aloha, the primary sampling site for HOT cruises.

At Station Aloha I was introduced to even more new equipment and sampling techniques while learning about directing deck operations and getting to know my cruise mates better. The cruise was business as usual until there was a malfunction in the Hawboldt hydraulics system forcing the rosette and CTD to be moved to an alternative tension-based wench system that routed through the ship’s A-frame. Unfortunately, soon after this new wench system was set up it also malfunctioned when proof of tension was not maintained for the system, forcing the repair of the original Hawboldt system. This series of events required a new termination and hours of work, wasting valuable ship time. While this was not an ideal situation, it showed that anything can go wrong on a cruise and that complex problem-solving is a requirement for a marine tech. In this way, it was a valuable learning experience for me. 

The rest of the cruise remained relatively uneventful, and I was able to learn about computer networking systems and using Linux from one of the marine techs as well as discuss what a career as a marine tech might look like. We were able to complete our sampling at Station Aloha, the WHOTS mooring, and Station Kaena and return to Honolulu without any other issues. I am excited to continue updating this blog with the new skills and experiences I gain over the next week working with CTD systems and processing data.

Best,

Hunter

 

 

Week 1: Getting to the Boat, Voyage from Nome to Dutch Harbor

On the morning of October 4th, I was awakened at 6 am in the Aurora Inn, Nome, Alaska, by our electrician and another technician. We were eager to check the weather and the status of the R/V Sikuliaq, our research vessel, but the fog, wind, and bad weather were definitely not in our favor. We couldn’t even catch a glimpse of the boat on the horizon. With no Wi-Fi in the hotel, we headed to the Polar Cub Café down the street to get online and see if there were any updates. Plus, the café provided a partial view of the dock, where we hoped to spot the ship.

(Sidenote: While at the café, the mooring technician and I almost ordered reindeer meat by mistake. That would have been an adventure.) Despite our efforts and waiting another hour, the boat remained pretty elusive in the fog. We made another attempt to reach it, riding in mud-covered vans (my first time, their second) but the boat still hadn’t arrived. But, we were greeted by a pleasant surprise: we saw beluga whales near the dock, at least four of them! I considered this unexpected wildlife encounter and the $13 spent on the trip definitely worthwhile. 

Returning to the Aurora Inn, we waited patiently for another couple hours, with periodic updates. Finally, the fog started to dissipate and sunlight came out and we spotted the ship approaching the dock from our inn’s windows. The electrician stayed behind to finish some work, but the other technician and I seized the opportunity on our third try. With bags in tow and maneuvering through mud, we embarked on the sketchiest thing I’d ever seen—a 30-foot moving ladder on wheels. It transported us safely onto the boat however. 

Once on board, I quickly took a rapid COVID test and met with my contact, who introduced me to my living quarters and explained my daily responsibilities. The entire ordeal, from our early morning start to boarding, had taken us until around 2 pm. I was ravenous, and my lunch of steak, mac and cheese, and orange juice tasted like the best meal in the world. To cap off the day, I joined the third mate in watching the end of “Young Frankenstein,” which I found hilarious. It was a great first day, and I was relieved to have finally made it on board. My room even had a large porthole, allowing me to enjoy the breathtaking Alaskan sunrises and sunsets.

I had heard rumors of the great food on the ship, and the next morning, October 5th, I eagerly looked forward to breakfast. I was not disappointed. The breakfast tacos with egg, sausage, black beans, and enchilada sauce were the best I’d ever had. I also indulged in steak with scrambled eggs, hash browns, and bacon. It had been a long time since I’d eaten like that, and to make matters worse, the food was unlimited throughout the day. I’m pretty sure I’ve gained a pound or two already from all the fresh blueberry pies, scones, cookies, and snacks.

The following days, the 5th, 6th, and 7th, passed quickly after my initial day. I focused on learning my responsibilities and familiarizing myself with boat procedures, including reading numerous SOPs and safety manuals, studying schematics, and completing paperwork. I had the chance to flush out the CTD, replace some pilons, and work with instrumentation in the ship’s bowels to prepare for the science party. Learning to identify alarms and sounds for irregularities was crucial in the rough seas, and I certainly earned my sea legs. Occasionally, I would visit the bridge to gaze at the horizon, and on my second day, as Los Lonely Boys’ “How Far Is Heaven” played, it felt fitting to witness such a stunning sunrise.

As we sailed toward Dutch Harbor, south of Nome in the Aleutian Islands, the weather warmed, and the snow became less prevalent. Currently, we are offloading gear in Dutch Harbor in preparation for the arrival of the next science party on the 10th, just two days from now. I’m excited to meet them, as I’ve read papers from almost everyone who will be on board. While I probably won’t confess that i’m a huge fan, internally, I’ll be freaking out.

This cruise primarily focuses on deploying and testing an AMOS ice-gateway buoy (heavy), or IGBH, equipped with different ocean and engineering sensors, as well as deploying, operating, and testing an Arctic-capable REMUS 600 AUV. We will also be recovering up to five SGX engineering gliders deployed from an earlier research vessel, the R/V Healy, earlier in the season. Additional glider deployments may also be on the agenda. Lastly, we will conduct over nine shipboard deep CTD casts.

This first week of the trip is really about preparation for the weeks to come, so I will be doing a big photo dump on this post of my little adventures in Nome (aka looking at all the old gold mining equipment), my work station, bridge views, etc. with whatever I have in my camera at the moment. I’ll document my experiences throughout the trip with photos and videos of all the fun things I’ll get to do listed above.

Thanks for reading, and stay tuned for more updates.

Mari 🙂

Week 0: Introduction

Hi Everyone!

My name is Jenn Willson and I am very excited to join the HOTS team this week on the R/V Kilo Moana as a MATE intern. I recently graduated from the University of Washington with a B.S. in Oceanography. In my time at UW, I worked as a research assistant with the Ocean Observatories Initiative where I spent two summers on board the R/V Thompson performing maintenance on the Regional Cabled Array. In my senior year, I worked at the Applied Physics Lab with the NW Environmental Moorings Team where I gained more technical experience. Both of these experiences inspired me to continue learning about marine technology as a MATE intern this fall!

I am incredibly grateful and excited for the opportunity to join the team of the R/V Kilo Moana for two research cruises this October. I’m looking forward to writing all about it on this blog in the coming weeks!

Jenn

Week 0: Pre-Internship Introduction

Hello everyone,

My name is Hunter Adams and I recently graduated from Texas A&M University with a BS in Oceanography and MS in Business. During my time at TAMU, I dedicated three years to researching methane and nitrous oxide concentrations in the northern Gulf of Mexico and participated in multiple research cruises as a result. Additionally, I spent two summers working at Los Alamos National Laboratory, where I studied reduced biogeochemical modeling for the Arctic region. Through these experiences, I’ve developed a special appreciation for ocean research and the importance of shipboard operations in generating consistent datasets for researchers. Outside of studying salty water some of my hobbies include riding motorcycles, spelunking, camping, rowing, and anything that gets me outdoors!

Now, I’m excited to embark on a new adventure by joining the Hawaii Ocean Time-series (HOT) program at the University of Hawaii at Manoa. This opportunity allows me to combine my interests in fieldwork and ocean biogeochemical research while learning the essential skills needed to become a successful marine technician. In just three days, I’ll be on the R/V Kilo Moana in Honolulu to prepare for the upcoming October HOT cruise. I’m excited to finally meet the crew, my internship mentors, and my fellow MATE intern in person after months of planning.

Over the next month, I look forward to keeping you all updated through these blog posts, sharing the incredible experiences and knowledge I gain during this exciting internship!

Special thanks to Dr. Shari Yvon-Lewis, Dr. Chrissy Wiederwohl, Dr. Nicole Jefferey, Maria Osiadacz, Carolina Funkey, Dan Fitzgerald, and everyone who made this all possible.

11th & 12th week with jASON/WHOI

Monday, Sept 11th – Sunday, Sept 24th

The first week started off with adding and attaching hydraulic lines to JASON and mounting a frame on JASON’s basket/face which would hold a large crawl profiler. After testing, we were able to launch and attach several profilers to lines at different locations. After completing the attachments, we then would lock into old profilers and recover them for servicing. 

We spent several days transiting back and forth to and from locations to swap out equipment and complete water sampling and visual inspections of hydrothermal vents. During this time, JASON’s main power box (Jetway) began to produce a burning smell. Once inspected, we realized the mount for the large transformer had given out, so the team worked together to remount the transormer using what materials and tools we had at hand. Luckily, it stabilized the system and once testing was completed, we were able to resume diving within a day. 

The water sampling dives continued through until the 12th week. JASON’s last dive was at a depth of 2900 meters, where we connected and tested cables/connectors to junction boxes and then surveyed the surrounding area. Once finished, the team immediately began demobilization. Some of the first tasks were to complete one final post-dive check, drain the vehicle, cut the cable/tether, replace all filters, and remove fiber and power connections. 

Once at port, the demob was in full swing. It only took a few days to disconnect the remaining power, network, and video connections, organize, fill, and load the tool, rigging, and control vans, break down the crane and winch systems, and crane over all equipment, vans, and systems off of the R/V Thompson. It was impressive to see how efficiently the team worked together to complete a full demob in only 2.5 days. 

On Sept. 20th, once everything was loaded off the ship and onto trucks, the team left to head to Portland. We celebrated a successful season by having dinner together and reminiscing on the last few months. I felt honored and priveledged to have been with these amazing individuals, I learned so many things from each one, and I look forward to seeing many of them out at Woods Hole. 

 

 

Tip of the Week: “Take notes.”

One of the biggest suggestions I could offer is to make sure you take notes at the end of each day, and even during the day too! There were so many times I would go back, again and again, to verify procedures, hardware, tools, helpful hints, or even small notes to myself as reminders when working this summer. When I would learn a new skill, or replacing thruster seals, or even draining and filling the vehicle, I would refer to my notes to confirm I remembered the steps involved. 

The time out here goes by quicker than you think, and I am grateful for all of it. We have been home a few days now, but we are already checking in on eachother to see how people are adjusting to home life again. This team, the science members, and the ship’s crew were all fantastic! I hope to work with them again someday. 

Best time of my life!!!!  Thank you MATE!!!

Week 5: Atlantic Explorer

The schedule of our last few cruises was moved around in response to hurricanes, and I was very lucky to get to go on one extra cruise for this internship. This morning, we finished our one and only cruise mission. In fact, my internship came full circle, because we recovered one of the lost mooring lines from my first cruise with our visitors from NIOZ. The buoy started communicating its position not too long ago, and it turns out that it drifted very far from its deployment site. It took 20 hours from Bermuda just to get to the mooring. Recovery took place this morning, and it’s nice to see the familiar face of these big orange buoys on deck again.
 

One of NIOZ’s buoys

I am also grateful for the two extra days of my internship, since it’s given me more time to work on my personal project. In an earlier post, I had mentioned the project but added no specifics because the whole thing was giving me a headache. By chance, I managed to find a component that was absolutely necessary for the project’s completion, one which I thought we didn’t have. I’m extremely thankful that it showed up just in time.

The project, in summary, was to connect a data logger to a weather transmitter, which senses several meteorological parameters like wind speed, temperature, and humidity, and sends them back to the logger. The sensor had, at some point in the past, been reconfigured to communicate in a way that was incompatible with all other devices on board that we could use to talk to it. There was no way to get through to it until I found an RS-422 to RS-232 converter. The converter takes the sensor signal I can’t read and changes it to one I can. From there, I was able to reconfigure the device’s settings so it could talk to the data logger. I even found a way to deploy it just outside the ship’s bridge.

 

Weather sensor deployed on ship

 

Right now, it’s collecting data, and what I’ve seen has been consistent and accurate, so I’m very happy with the state of the project. If I can find time, I will plot the data over the collection period and compare it to data from other ship-board sensors. 

We are currently headed back to Bermuda, and I will depart from BIOS soon afterwards. I am going to wrap up my project and, importantly, document as much of it as I can in case someone else picks up the same weather sensor and needs help communicating with it. I’ll leave some parting words on this blog site once the internship is over and I’ve had some space for reflection.
 

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