Month: July 2017

Week 2 Aboard the Walton Smith: Tucker Trawls, Shrimp, and Bioluminescence

One week down and two to go. This week we set off on a five-day cruise to collect deep-sea, pelagic zooplankton using a tucker trawl. A group of about 10 graduate students and professors from three different universities came on board and brought along a fully stocked field lab. We spent Monday loading up the gear, setting up the tucker trawl and planning the deployment schedule. I worked with Denis to securely fasten the CTD to the tucker trawl frame, a complicated task as the CTD would be dragged through tons of water for several hours. With the help of several bolts, screws, washers, electrical tape and countless zip ties, Denis and I were finally satisfied that every wire, connector and plug was securely fastened. 

 

Our first deployment was early the next morning. I groggily climbed out of bed at 4:00 am and made my way to the deck, where scientists and marine techs alike were congregating in preparation for our first deployment. We all worked together to make sure the Tucker Trawl was properly assembled, the CTD and release timer securely fastened, and the net untangled and ready to deploy. Finally, we were ready to toss it into the water. Using the hydraulic crane and several lines, we slowly lifted the frame off the deck, lowered the collection tube into the water and swung the frame off the deck. The last step was to pull the securing line which release a set of cables and opened the net as it sunk into the depths of the ocean. The trawl was going to be dragged along behind the boat for six hours between 500 and 700 meters. As the cruise was accommodating three separate projects, the scientists on board were hoping for an eclectic sample of zooplankton and pelagic, deep-sea organisms. Primarily, the projects involved collecting various species of bioluminescent shrimp so as to dissect and analyze the bioluminescent component of their physiology.

While we waited for the trawl, I was enlisted to assist with the cleaning and waxing of the awnings on the top deck, a tedious but necessary task for the proper maintenance of the boat. The first mate then requested my help to organize the navigation charts, which was the perfect opportunity to learn a bit more about the different kinds of charts and how to read them.

At last, the six hour trawl was complete and the net was dragged back on board and greeted by an enthusiastic swarm of scientists, all eager to see what treasures the extensive trawl had gathered. I can honestly say the crew of scientists was not disappointed as they dragged bucket after bucket of a thick soup of organisms and seaweed into the lab. The next few hours were spent sorting the shrimp, fish, and other invertebrates into neat groups by species, and often, subspecies. They were kind enough to tolerate me as I excitedly buzzed around the lab asking several questions about the nature of bioluminescence, its purpose and the underlying physiology. I even got to observe larval shrimp under a microscope as a professor enthusiastically explained the nature of a double retina in the developing shrimp. Much to my delight, the trawl had also gathered several types of bycatch, many of which were adorable, miniature versions of marine animals. My favorites were the tiny, larval squid and on occasion, the smallest larval crab I have ever seen. Luckily, I was surrounded by a group of biologists that were all eager enough to teach me about the nature of these fascinating deep-sea organisms and their unique biological adaptations.

And so the cruise continued as we tossed the trawl back in the water and waited with baited breath for the next haul of organisms.

 

After deploying the trawl three times throughout the day and night, we came across our first technical problem. The timed release mechanism that was mounted on the frame of the tucker trawl and provided the crucial function of sealing the collection chamber at the end of the net and protecting sensitive bioluminescent organisms from excessive exposure to sunlight stopped working. It turns out that water got into the previously watertight chamber that housed the batteries and electrical trigger mechanisms and fried the entire system. Luckily, we have highly qualified and capable engineers and marine techs on board that were happy to attempt to fix the problem. We took the trigger mechanism apart, piece-by-piece, and replaced the corroded battery circuit with a new one. I had an opportunity to hone my wire stripping, crimping, and replacing skills as we rebuilt the mechanism.

 

After waiting a few hours for the silicon holding the circuit in place to set we finally got a chance to test it out. Unfortunately, despite our optimism, it did not work. It looked like the engine in the trigger mechanism itself was damaged so we decided to replace the entire engine, which of course meant undoing all our previous work. But, step-by-step, we took the machine apart and replaced the centrally located engine. After several cut and crimped wires and even threading new holes for the screws (we think there was a manufacturing error where the bolt holes on top of the casing for the engine had no threading) the trigger mechanism was finally fully rebuilt and once again we waited with bated breath to see if our efforts would pay off. Thankfully, it turned out that the engine was once again fully operational, much to our and the scientists delight.

 Much like the days before, the rest of the week involved a series of trawl deployments, monitoring, and recovering. However, on Thursday, the scientists on board allowed me to assist with the sorting of the organisms they collected. They gave me a pair of forceps and a tray of deep-water pelagic organisms and patiently taught me to distinguish between several fish, shrimp, and other amphipods. I spent the day working the trawl and picking through marine organisms, sargassum and debris. The experience was fascinating as I got to observe several deep-sea organisms that few people get to witness in person.

 

Our final day had a very early morning start that resulted in a pleasant surprise. I joined the scientists in the dark room on their last trawl collection and was delighted to sea the Acanthephyra purpurea, a fascinating shrimp that spews a cloud of bright blue bioluminescence to distract predators, and we were even lucky enough to see it spit out a beautiful bioluminescent cloud. I also got to se several luminescent copapods, pyrosomes, and jellyfish. It was an awe-inspiring experience to see so many deep-sea and elusive organisms up close and personal.

The rest of the day was spent honing my amphipod sorting skills and learning about several new animals, including my new favorite, the phronima, a tiny parasitoid that lives inside a hollowed out salp and supposedly inspired “alien” from the movie by the same name. The cruise was an incredibly mix of technical skills and biological research and was a incomparable learning opportunity that I took full advantage of. A cruise I will certainly not forget any time soon.

On shore in Bermuda

With a little more than a week until my next cruise, I will be spending my time on-shore in Bermuda, aboard the vessel. While I have the option to stay within a dorm, I am becoming quite fond of this living space- the largest vessel (170′) that I have been on yet! As we came in early Friday morning, we were fortunate enough to have the weekend to ourselves. I spent the weekend exploring Bermuda, snorkeling its shores and catching up on several tech duties. Start Monday, we began mobilization.

                                

Off of Fort St. Catherines, near Tobacco Bay in St. Georges parish, I found a socluded snorkel spot where I spent most of my weekend.

Come Monday, we began our demobilization process. The process was fast and efficient, as the BATS crew are a “well-greased machine” and well accustomed to the Atlantic Explorer. The main order of business- aside from the usual post-cruise data collection, clean-up and upcoming cruise preparations- was to transfer our gyro compass (used for heading and navigation information) to back-up battery power.

                                

                                            Photo credit: Nick Mathews

                                

                                      Photo credit: Nick Mathews

The process was a little bit nerve racking, as the UPS system is very powerful, and hasty decisions can lead to mistakes or electrical shock. We turned off our UPS power, and then wired our GYRO to a battery pack. We closed the circuit- with a small spark- and have been receiving accurate headings since. So far, so good!

 

Week 1 Aboard the Walton Smith: Knots, Navigation, and CTDs

After making the trek from Nicaragua to Miami I finally arrived at the F.G Walton Smith, a ship that fully lived up to its expectations. Arrival was followed by a whirlwind tour of the boat and a speedy introduction to the crew. Denis, the marine technician on board and an individual who clearly loves what he does, was eager to show me all the tech on board. Within my first hour on the boat I was already learning about the different kinds of servers, connecters and circuits that keep the ship running and reliable.

By the second day on the Walton Smith it already felt like home. An early morning breakfast was followed by a new lesson, this time about the engine room and the ship’s communication methods. A tour of the engine room revealed the complexity of the ship’s inner workings. Huge rotating gears connected to metal casings that house the very guts of the ship fill the engine rooms and intimidate any aspiring engineer. Since the engines seemed to be fully functional and smoothly operating I turned to a new task. The horn on the aft deck was heavily corroded and barely functional so I was given the task of replacing it with a new one. Thus I received my first hands-on lesson on wire stripping, threading and replacing. And so, step by step, I removed the old horn, wires and all, and replaced it with a shiny new one.

Our first cruise was a short one, only two days long, and had the objective of assisting NOAA with a long-term project monitoring and collecting CTD data along a transect of the Gulf Stream off the coast of Florida. On Thursday morning, the ship was fully loaded with equipment and off the docks and into open water by 6:00 am and within a couple hours we were surrounded by nothing but beautiful, deep-blue sea. Since it took several hours to arrive at the first station, where we would be deploying the CTD, I spent the day in the bridge with the captain and second mate where I learned everything from knot tying to celestial navigation. The knots started off easy with a granny knot, but I quickly worked my way up to the significantly more complex Spanish bowline knot. We then moved on to learning about the mechanics of steering a ship, covering everything from pitch directionality to throttle and speed. Finally, we moved onto celestial navigation where I learned the difference between variation and deviation and how to spin a compass to determine the degree of deviation due to the mechanical components aboard the ship. Scrutinizing navigation maps led to celestial navigation and the applications of a sextant. With a huge assortment of eclectic information swirling in my head, I was happy to spend a few hours relaxing on the bow and watching the boat gently sway about on the ocean swells.

After several hours navigating along the Florida coast, we finally arrived at our first station where the NOAA team planned to deploy the CTD. I watched as the CTD was slowly lowered with the hydraulic crane into 600 meters of water. Once at the bottom of the water column, the CTD was slowly pulled through the water, stopping at periodic intervals to collect water samples using a trigger mechanism connected to the fiber optic cable found within the cable used to hoist the CTD. As the massive contraption was dragged through the water column it also collected and transmitted real time conductivity, temperature, and depth readings, which the NOAA scientists eagerly monitored on a screen in the dry lab.

Once the CTD was back on the deck, water samples were partitioned into oxygen content readings, organic compound samples, and salinity samples, all of which were carefully collected, processed, and stored away for future analysis. Since there wasn’t much to do in the way of mechanics or engineering, my role was to assist in the collection and processing of the oxygen content samples, which primarily involved carefully filling bottles with aliquots of water samples and adding two compounds that helped quantify oxygen content.

The NOAA crew was also working on deploying a series of three different drifters; floating computers that use satellite GPS systems to track current speed and directionality. In this case, they were not only testing the efficiency of three different styles of drifters, but also collecting data on the Gulf Stream to assist in calibrating measurements obtained from a submerged telephone cable that measures current flow and speed by recording fluctuations in electromagnetic currents as currents pass over the wire. The team was only too happy to let me assist in throwing the massive computers off the deck and into the Gulf Stream, where we watched them float away with surprising velocity. We started deploying the CTD and the drifters around 6:00 in the afternoon and were not done until about 7:00 the next morning. It was a long and exhausting night, but one full of learning opportunities and unforgettable experiences.

 

 

A Welcoming Arrival and First Cruise in Bermuda

                                

After a short jaunt home, followed by several cancellations and delays, I have finally made it to Bermuda! Unfortunately, I arrived late-so while I was unable to meet the crew upon my arrival, I was welcomed with my first Bermudian sunset. After meeting the crew and my two mentors the following morning, I took a short walk around the BIOS station and familiarized myself with the boat. Around 14:30 this afternoon, we made a short transit to the other side of St. George to load up our science party- and to avoid issues with low tide. The rest of the day consisted of safety briefs, drills and a little bit of exploration. Bermuda is breathtaking and I am beyond elated to explore its beauty!

Cruise:

My first cruise will last less than a week and will consist primarily of BATS and Hydrostations. BATS, an ocean data time-series established in 1988, provides long-term data for the open ocean of Bermuda. Similiarly, a nearby relative HYDRO, is another data-time series established in 1954. Together, these two regoins have been supplying inumberable data, insight and measurements within the field of oceanography.

My first cruise consisted primarily of CTD work, along with a few PITS sediment traps, primary production arrays, zooplankton and phytoplankton tows. Additionally, we dragged a few in-situ pumps off the back deck. While I am familar with both the CTD and net tows, the PITS sediment traps and the primary production array were new to me. PITS stands for particle intercept trap system and is essentially a line towed off the back deck with flask at varying depth, which catch sediment onto a filter. The production array is a long winch rope line, fed through our a-frame wheely, and consists of a tray of erlenmeyer flasks filled with water. The flasks are set spatially along the line and sent deep down past the photsysnthetic zone. The array line is deployed early morning before the sun rises and retrieved after dark.

 

                                                 

                                              Photo Credit: Nick Mathews

Aside from similiar work, I was happy to find many familiarities between the technology of the Atlantic Explorer and prior boats I have spent time on- the Pelican and Point Sur. The CTD station is within the wheelhouse and is centered along a large flat screen TV – capable of changing its view to our navigation, ADCP and Knudsen- along with a winch monitor displaying tension, payout and speed.  The system setup is reminiscent to a CTD movie theater and is an effective display method for scientists and techs alike. Additionally, the winch operator- also located in the wheelhouse- is no more than two feet from our stations, making communication very easy and effective. To make matters more coveninent, a CTD depth sensor is mounted to the winch station for optimal use. Aside from the CTD station, and the wide living plan of the Atlantic Explorer, the principle of technology and work is very similiar. Today, we made our way to several BATS stations, completed several CTD casts, along with several zooplankton and phytoplankton tows. The tows were dragged off our back deck, 250m below the surface at 1.5 knots for half an hour each.

 

Before I Set Sail

Hi all, my name is Lauren Kowalski and I’ll be interning aboard the R/V Neil Armstrong!

Sailing on the R/V Clifford A. Barnes collecting oceanographic data at the mouth of the Elwha River in the Strait of Juan de Fuca. Photo credit: Mark D. Stone.

I am a recent graduate from the University of Washington with a B.S. in Oceanography. Up until now I have gathered about 12 weeks of ship time aboard various research vessels as a part of the scientific party. Now as a marine technician intern, I have been given an exciting opportunity to expand my knowledge and experience and work as the interface between the ship’s crew and the scientific party.

My internship will be focused on recovering and replacing moorings and other scientific instruments from an OOI site off the coast of Greenland called the Global Irminger Sea Array! (I really hope we get close enough to see land!) OOI stands for the Ocean Observatories Initiative, where ‘underwater observatories’ have been established at different locations across the globe. Each site includes a number of fixed scientific infrastructure at the seafloor and throughout the water column to collect real-time data. In addition to the fixed infrastructure there other scientific instruments deployed by scientists aiming to collect data on a specific aspect of that site.

Map of established OOI sites. Photo credit: http://oceanobservatories.org/research-arrays.

Quite fortunately, while at UW, I had the privilege of working at another OOI site called the Cabled Array which is located off the coast of Oregon. In fact, I completed my senior thesis using data collected from a methane seep site, called Hydrate Ridge, which is one of the sites within the Cabled Array.

Now I get to continue my involvement with OOI in a different ocean at a new site with different oceanic processes!

I am very excited to have been given this opportunity and I can’t wait to share my experience with you!

Lots of pictures to come!

 

~ Lauren

Week 4 on the F. G. Walton Smith

This was my final week for the internship. It started off with a conclusion to the EPA research cruise. The EPA was gathering sediment samples from two different dredge spoil sites. They also dived near one them. The cruise ended early because off their success with gathering sediment samples. Normally, they have a bit of trouble gathering them because the sample has to meet strict requirements, such as the following: the sample cannot show signs off overflowing or any bit being lost upon recovery, there needs to be a sediment-water interface, and the grab must have closed properly and completely.

While the EPA was busy sampling and we were going to different sites, I assisted the 2nd mate in trouble-shooting the problem with one of the speakers. The speaker had not worked in about a year. I installed a new switch button for the speaker and was about to wire a new speaker when I noticed the wire looked eroded. I tried to strip it back to see if there was a cleaner part, but it looked the same. I installed the speaker despite this. The speaker was a two-way speaker. I then spent a couple of days trouble-shooting this new speaker. The problem with it was that it only worked one way instead of both – my thought was that some of the wires were too eroded.

On the last day of the cruise, I helped take the small boat out to a dive site. I was acting as the dive tender, which keeps an eye on the divers and records information about pressure and depth. Unfortunately, after some time on the small boat I got a little sea sick. This was the first time and last time that cruise that I had gotten sea sick.

On Tuesday night, the 11th at about 2100, we made it back to the dock and the cruise was over. I spent the next couple of days doing maintenance on the boat and some of the scientific gear. I helped clean the CTD, the SBE45 (underway system) Thermosalinograph’s sensors, the galley and its stores, and helped power wash the algae off the side of the vessel.

I am very grateful for this experience. I enjoyed my time in the Walton Smith and I learned a lot about the job of a marine technician. I also learned about areas where I need further practice and experience. Dennis, the marine technician, was great and I really enjoyed learning from. He would explain something to me, maybe show an example, and then send me off to fix something or accomplish a task.

The rest of the crew was also very kind and helpful to me. I cannot thank you all enough!

Before the internship aboard the F.G Walton Smith

My name is Jessica Gronniger and I have had what most people would consider an unconventional life. I am half Brazilian and half American but I was born in Italy. Growing up I moved around a lot as my father worked in international education. At 23 years old I have already learned four languages and lived in nine different countries. Perhaps the toughest question I have to answer is “where am I from?” and it’s a question I seem to have to answer a lot. Well, in a life rife with change there are very few things that have remained constant. Among them is my passion for the ocean and a life on the water. No matter where I found myself in the world I always managed to find a way onto the water. I’ve lived aboard a 30 foot catamaran for a month with 17 other people, kayaked through tropical mangroves in Honduras, and spent hours with my college sailing team out on Lake Norman in North Carolina and yet I get the feeling that my previous adventures will pale in comparison to the F.G Walton Smith.

A year ago, I graduated from Davidson College with a B.S. in biology and I now find myself living in Leon, Nicaragua where I am collaborating on Zika research. While intellectual curiosity has often driven me towards lab work I have learned these past few years that I can’t spend my life locked in a laboratory. So, here I am, exploring a way to mix my passion for science with my love of the ocean, and being a marine technician seems to be the best of both worlds. Hopefully this will be the first step towards a future in marine research and a life at sea. I am incredibly excited about this opportunity and I hope I can make the absolute most of it. As my supervisor said, my job now is to be a sponge, and a sponge I shall be.

So here I sit, after a two hour bus ride on a highway that twists between active volcanos, lakes, and quaint rural towns I am finally in Managua (Nicaragua’s capital and location of one of the few international airports in the country) in an airport hotel eagerly awaiting for this new adventure to begin. So stay tuned as my latest journey unravels. I’m sure more exciting developments are yet to come.

Home and an Awaiting Adventure in Bermuda

Now,

I have spent almost two weeks home- though, it feels like no time at all. After more than three months at sea, I have been very grateful towards the amenities of home- personal bedrooms, bathrooms and mum’s homecooked meals. Being home has involved a whirl wind of family, friends, and lots and lots of hiking.

Though it has been incredible to visit loved ones, walk the local trolley tracks behind my house and go camping, much of my time at home has dealt with my preparation for Bermuda. I will spend three months total in Bermuda, and because it is not attached to the mainland like Louisiana, I must pack sufficiently and fully. In classic Amanda fashion, I was adding last minute items the night before. My most beloved items- aside from sunblock- is my ukulele and journal.

Of course, I did not forget the important ammenities- which is heavily, heavily packed- paperwork included. The idea is to last three months, if need be, from all my packed goods.

My flight has been pushed back a day and I will leave tomorrow. I am full of awe, adventure, meloncholy, and gratefulness for my adventure.

 

– Until Bermuda!

Week 3 on the F. G. Walton Smith

This week started off with having a bit of a break before the next cruise. I used the time to explore Miami. I went to the Everglades – within them there was a place called Shark Valley – where there were tours on trams, bicycles, or on foot. The chief on the Walton Smith took me there and we walked around for a bit, but we decided to leave early because of all the mosquitos. I saw a dead alligator, which was interesting.

On the 4th, I viewed the fireworks at Coconut Grove. I enjoyed it a lot because not only could I see the fireworks they were firing in the grove, but fireworks were being shot from all over. I decided against going to one of the beaches to view the fireworks because they were packed with people on them.

In Coconut Grove, I also visited Barnacle Park (the front of the park is in the picture below with me and the large anchor). This park is a historical site within a busy shopping district.

Before we left for the cruise, on the 7th and 8th, I helped get everything on the boat ready for the cruise and did a little bit of fishing (as you can see below, I am a very skilled angler). On the 7th, I helped the second mate (Kevin) switch the Walton Smith’s small boat for a newer one. We went to a nearby boat ramp, I piloted the new one of the trailer and he put it the old on it. We then took it out for a test before returning to the Walton Smith.

Later on the 7th, Kevin and myself were trying to catch fish from the stern of the Walton Smith at dock. We baited them with old food the cook was going to throw out. This is the biggest fish I caught, Kevin caught a couple larger fish.

We departed the dock around 1130 on the 8th. The goal of this cruise is to sample sediment at a couple of dredge spoil sites. The scientists are looking at how the piles of sediment and rock have moved, they are testing it for things like PCB concentration and other things. The grab we are using is the one below. We are also using a CTD to gather water quality data.

The following day (today the 9th), they finished sampling at the first site, which I think was just off Miami. We should arrive at the next site (near Cape Canaveral) in the morning and resume sampling.

On this cruise so far, I have helped set up serial communication between the GPS and the scientist computer, deploy/ recover the grab and the CTD, and have lent a hand when needed.

Week 2 on the F. G. Walton Smith

On Monday the 26th of June, we set out on a three-day cruise. The goal of the cruise was to tag Mahi mahi and to try to keep certain sized ones, in these large blue containers (below), alive for 24 hours before releasing them. The scientists measured them and recorded the sex. The dead ones or the ones not within the size range they were trying to catch were dissected and further analyzed.

The mahi were caught with fishing poles trolling behind the vessel and from a smaller fishing boat (as is in the picture to the right). If the smaller boat caught one, the team on the Walton Smith would attach a tennis ball to a fishing pole and cast this ball to the smaller fishing boat. The team on the smaller fishing boat would then attach this line to the line they had caught a fish with, so that the Walton Smith team could then reel the fish in to them.

I helped mount the side pole on the port side of the Walton Smith ( picture below).

This pole had a vacuum on it that sucked in water that would fill the containers the fish were put in. Dennis, the marine technician, and myself would also deploy a carousel with nisken bottles and a CTD on it every evening for each of the three days. On this cruise, the scientists were mostly just catching fish, so there was some free time available for me. During this time, I learned to replace RJ45 (ethernet) connectors (picture below) that had become damaged on various CAT5 cables and learned about serial and ethernet communications.

Most of the fish were caught from the smaller boat and transferred to the Walton Smith. The fish were caught mostly between 0800 through 1600. We stayed in the Straits of Florida for most of the cruise. The water was very calm – I did not get sea sick at all and felt fine the whole time!

On Wednesday the 28, we returned from the cruise. For the following couple of days at the dock, I did the following: set up RS232 connections from the tech lab to a computer on in the dry lab for the next cruise, put together a tv antennae and wired it from atop the bridge into the mess area’s tv, learned how to crimp coaxial cables, prepared for the next cruise by bringing the bottom grab on the boat, and helped clean up around the vessel.

I am very grateful to Dennis for teaching me more about being a marine technician and for giving me an active role in assisting him. I learned some helpful tricks and skills that should come in handy down the road. I look forward to the next cruise, which starts on the 8th of July and goes to the 13th.

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